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Documentation
Getting Started
Motivation
Installation
Quick Overview
User Guide
Wrapper
Creating HDF files
Creating HDF Datasets
HDF5 and RDF: Toward FAIR Attributes
Processing with HDF5 datasets
Group creation
Inspecting the File content
Natural Naming
Special I/O
Convention
Activate a Convention
Working with a Convention
Creating a convention
HDF5 and ontologies
Examples
EngMeta
Creating a convention using metadata4ing
Provenance
Linked Data
Getting Started with Linked Data
Command Line Serialization
Local Web Viewer
IRI Resolver
Graph Metrics
SHACL Validation for HDF Files
Layout
Getting Started with “Layouts”
Example Layouts
Database
First steps: HDF5 and databases
Using HDF5 file(s) as a database
HDF5 + mongoDB
Repository
Zenodo
Catalog
Catalog – Working with Distributed HDF/RDF Data
Misc
Identifier
Extensions
Visualization
Working with time data
User directories
File properties
Query HDF metadata with SPARQL
Practical Examples
Visualize HDF5 in a knowledge graph
metadata4Ing
Example: Inspecting a NeXus File
Reading Photon-HDF5
HowTo
… change the package settings?
… access datasests inependent on its upper or lower case?
… slice a dataset based on a condition?
… load a convention from a local YAML file?
How to work with torque data
Glossary
API Reference
h5rdmtoolbox.wrapper.core.File
h5rdmtoolbox.wrapper.core.Dataset
h5rdmtoolbox.wrapper.core.Group
h5rdmtoolbox.convention.core.Convention
h5rdmtoolbox.convention.core.use
h5rdmtoolbox.convention.StandardAttribute
h5rdmtoolbox.wrapper.h5attr.Attribute
h5rdmtoolbox.database.FileDB
h5rdmtoolbox.database.FilesDB
h5rdmtoolbox.repository.upload_file
h5rdmtoolbox.layout.Layout
h5rdmtoolbox.ld.shacl.validate_hdf
h5rdmtoolbox.ld.get_ld
h5rdmtoolbox.ld.hdf2ttl
h5rdmtoolbox.ld.hdf2jsonld
h5rdmtoolbox.ld.compute_metrics
h5rdmtoolbox.ld.compute_graph_metrics
h5rdmtoolbox.compute_metrics
h5rdmtoolbox.wrapper.core.File.metrics
h5rdmtoolbox.utils.generate_temporary_filename
h5rdmtoolbox.utils.has_datasets
h5rdmtoolbox.utils.has_groups
h5rdmtoolbox.utils.DownloadFileManager
References
Repository
GitHub Repository
Repository
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