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Documentation

  • Getting Started
    • Motivation
    • Installation
    • Quick Overview
  • User Guide
    • Wrapper
      • Creating HDF files
      • Creating HDF Datasets
      • HDF5 and RDF: FAIR Attributes
      • Processing with HDF5 datasets
      • Group creation
      • Inspecting the File content
      • Natural Naming
      • Special I/O
    • Convention
      • Activate a Convention
      • Working with a Convention
      • Creating a convention
      • HDF5 and ontologies
      • Examples
        • EngMeta
        • Standard Name Convention
        • Interfaceing HDF5 files following the Standard Name Convention
        • Creating a convention using metadata4ing
        • Provenance
    • Layout
      • Getting Started with “Layouts”
      • Example Layouts
    • Database
      • First steps: HDF5 and databases
      • Using HDF5 file(s) as a database
      • HDF5 + mongoDB
    • Repository
      • Zenodo
    • Misc
      • Identifier
      • Extensions
      • Visualization
      • Working with time data
      • User directories
      • File properties
      • Query HDF metadata with SPARQL
  • Practical Examples
    • Visualize HDF5 in a knowledge graph
    • metadata4Ing
    • Example: Inspecting a NeXus file
    • Reading Photon-HDF5
  • HowTo
    • … change the package settings?
    • … access datasests inependent on its upper or lower case?
    • … slice a dataset based on a condition?
    • … add an affix-function to a standard name table during runtime?
    • … load a convention from a local YAML file?
    • How to work with torque data
  • Glossary
  • API Reference
    • h5rdmtoolbox.wrapper.core.File
    • h5rdmtoolbox.wrapper.core.Dataset
    • h5rdmtoolbox.wrapper.core.Group
    • h5rdmtoolbox.wrapper.core.Group.create_from_yaml
    • h5rdmtoolbox.layout.core.LayoutSpecification
    • h5rdmtoolbox.layout.core.Layout
    • h5rdmtoolbox.convention.StandardAttribute
    • h5rdmtoolbox.convention.StandardAttribute.get
    • h5rdmtoolbox.convention.StandardAttribute.set
    • h5rdmtoolbox.convention.standard_names.name.StandardName
    • h5rdmtoolbox.convention.standard_names.table.StandardNameTable
    • h5rdmtoolbox.convention.standard_names.table.StandardNameTable.from_web
    • h5rdmtoolbox.convention.standard_names.table.StandardNameTable.from_yaml
    • h5rdmtoolbox.convention.standard_names.table.StandardNameTable.from_xml
    • h5rdmtoolbox.convention.standard_names.table.StandardNameTable.from_zenodo
  • References

Repository

  • GitHub Repository
  • Repository
  • Open issue
  • .rst

Practical Examples

Practical Examples#

This chapter will provide practical examples and can be expected to grow over time. So stay tuned!

  • Visualize HDF5 in a knowledge graph
  • metadata4Ing
  • Example: Inspecting a NeXus file
  • Reading Photon-HDF5

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Query HDF metadata with SPARQL

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Visualize HDF5 in a knowledge graph

By Matthias Probst

© Copyright 2024, Matthias Probst.